Package: syrona
Type: Package
Title: Stratified Prevalence Comparison Across OMOP CDM Datasets
Version: 0.2.2
Authors@R: person("Maarja", "Pajusalu", email = "maarja.pajusalu@ut.ee",
    role = c("aut", "cre"))
Description: Derives stratified prevalence tables from the condition,
        procedure, and drug records in OMOP CDM (Observational Medical
        Outcomes Partnership Common Data Model) databases, computes
        log2 prevalence ratios between paired datasets, and synthesizes
        them via random-effects meta-analysis at multiple aggregation
        levels (year, age group, and sex). Between-study variance is
        estimated with the Paule-Mandel method, as described in Paule
        and Mandel (1982) <doi:10.6028/jres.087.022>.
License: MIT + file LICENSE
URL: https://github.com/HealthInformaticsUT/Syrona
BugReports: https://github.com/HealthInformaticsUT/Syrona/issues
Encoding: UTF-8
Language: en-US
Depends: R (>= 4.1.0)
Imports: dplyr (>= 1.1.0), dbplyr (>= 2.3.0), DBI (>= 1.2.0),
        CDMConnector (>= 2.0.0), omopgenerics (>= 1.3.0), tibble,
        tidyr, cli, rlang, shiny, ggplot2, ggiraph, ggtext, scales,
        grDevices, stats, readr (>= 2.0.0), meta (>= 6.0.0)
Suggests: testthat (>= 3.0.0), duckdb (>= 0.9.0), RPostgres,
        CohortConstructor (>= 0.6.0), DT, shinycssloaders, knitr,
        rmarkdown
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://healthinformaticsut.r-universe.dev
Date/Publication: 2026-09-21 10:32:32 UTC
RemoteUrl: https://github.com/healthinformaticsut/syrona
RemoteRef: HEAD
RemoteSha: 1e1d32a980e7689f7b36d0ff8ce8ac29510c468a
NeedsCompilation: no
Packaged: 2026-10-21 10:51:11 UTC; root
Author: Maarja Pajusalu [aut, cre]
Maintainer: Maarja Pajusalu <maarja.pajusalu@ut.ee>